Soak the rice noodles in a bowl of hot water according to package directions until tender, then drain and set aside.
In a small mixing bowl, whisk together the tamari, lime juice, honey, and red chili flakes to create the sauce.
Heat the toasted sesame oil in a large skillet or wok over medium-high heat.
Add the shrimp, minced garlic, sea salt, and black pepper to the skillet, sautéing for 2-3 minutes until the shrimp are pink and opaque.
Push the shrimp to one side of the pan and crack the egg into the empty space, scrambling it quickly until just set.
Add the drained noodles and fresh bean sprouts to the skillet with the shrimp and egg.
Pour the prepared sauce over the mixture and toss everything together for 1-2 minutes until the noodles are well coated and heated through.
Remove from heat and garnish with chopped green onions and fresh cilantro before serving.