In a medium-sized bowl, crack the eggs and add the cottage cheese, sea salt, and black pepper.
Whisk the mixture vigorously until the eggs and cottage cheese are well combined and slightly aerated.
Place a non-stick skillet over medium-low heat and add the ghee, allowing it to melt and coat the bottom of the pan.
Add the baby spinach to the skillet and sauté for approximately 1 minute until the leaves are just wilted.
Pour the egg and cottage cheese mixture into the skillet over the spinach.
Using a silicone spatula, gently push the eggs from the edges toward the center, creating soft curds.
Continue cooking slowly until the eggs are set but still appear moist and creamy, then remove from heat immediately.
Transfer to a plate and garnish with the freshly chopped chives before serving.