Preheat a non-stick skillet over medium heat and add the extra virgin olive oil.
Add the diced zucchini and red bell pepper to the skillet, sautéing for 5-7 minutes until the vegetables are tender and slightly caramelized.
While the vegetables cook, whisk together the large eggs, egg whites, Greek yogurt, sea salt, and black pepper in a medium bowl until the mixture is completely smooth and aerated.
Remove the sautéed vegetables from the pan and set them aside on a plate.
Lower the skillet heat to medium-low and add the ghee, swirling to coat the surface.
Pour the egg mixture into the skillet and let it sit undisturbed for about 30 seconds until the edges begin to set.
Using a silicone spatula, gently push the cooked eggs toward the center to create large, soft curds.
When the eggs are nearly cooked through but still look moist, fold the sautéed vegetables back into the pan.
Remove the skillet from the heat immediately and garnish with freshly chopped chives before serving.